Subodh Kumar | Texas Tech University Health Sciences Center

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Subodh Kumar

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Subodh Kumar, PhD

Research Assistant Professor

 

I did my masters in Biotechnology from Choudhary Charan Singh University, Meerut and Ph.D. from Post Graduate Institute of Medical Education and Research (PGIMER), Chandigarh, India. My Ph.D. thesis research was on liver-specific microRNA-122 (miR-122) and hepatitis C virus infection. I studied several aspects of miR-122 in relation to hepatitis C - i) expression of circulating miR-122 in Hepatitis C patientsā€™ serum and its correlation with disease severity, ii) role of miR-122 in hepatitis C virus (HCV) replication and propagation using in vitro cell culture system, iii) role of miR-122 in hepatocellular and tumor suppression. MicroRNAs (MiRNAs) are the class of small non-coding RNA molecules regulating gene expression by binding with the 3ā€™-UTR of their specific target mRNAs and implicated in various human diseases including cancer, cardiovascular diseases, liver diseases, viral infection, diabetes and in neurodegenerative disorders. MiRNAs also participate in inter-and-intracellular communication and are transported from cells/tissues to the extracellular spaces and bio-fluids. In the diseased state, endogenous levels of miRNAs change in disease-infected tissues and occasionally are released into the peripheral system. My long-term goal is to build up my research carrier in miRNA biology and to understand the biomarker and therapeutic impacts of miRNAs in human diseases.

I joined Dr. Reddyā€™s lab as a postdoctoral research associate in 2015. Dr. Reddyā€™s lab is working on several aspects of Alzheimerā€™s disease (AD) such as APP processing, AĪ² pathology, Tau/p-Tau pathology, synaptic dysfunction, mitochondrial biogenesis, mitochondrial dynamics, and mouse models of aging and neurodegenerative diseases. In Dr. Reddyā€™s lab, my research project was to investigate the peripheral circulating miRNAs as biomarkers for AD. We performed the global Affymetrix microarray analysis of serum samples collected from AD patients, Mild cognitive impairment individuals (MCI) and healthy controls. We identified several miRNAs which were deregulated in AD vs MCI vs healthy subjects. Our careful validation analysis of potential miRNAs on large number of AD serum samples, AD postmortem brains, AD Fibroblasts, AD B-lymphocytes, AD mouse model (Tg2576) and AD cell lines identified microRNA-455-3p (miR-455-3p) as potential biomarker for AD. Our lab was the first to discover the role of miR-455-3p in AD. Further, we investigated the molecular mechanism of miR-455-3p in AD progression and pathogenesis. We unveiled the protective role of miR-455-3p in APP processing, AĪ² pathology, mitochondrial biogenesis, mitochondrial dynamics and synaptic activity. 

  • Pathway to Independence Award (K99/R00) from National Institute of Aging, National Institute of Health in Sep 2020.
  • Presented a poster on ā€œImpact of lifestyle factors on cognitive function      in Alzheimerā€™s Disease animal modelsā€ Morton H, Kshirsagar S, Kumar S, and Reddy PH at 33rd Annual Student Research Week 2021, on March 10, TTUSHC, Lubbock Texas
  • Presented a poster on ā€œMitochondrial division Inhibitor 1 improves endoplasmic reticulum-mitochondrial contacts in Huntingtonā€™s diseaseā€, Neha Sawant, Subodh Kumar, Murali Vijayan, Bhagwati Ramasubramanian, Pradeepkiran Jangampalli Adi, P. Hemachandra Reddy at Annual Student Research Week 2020 on March 10-13, Ģš¹ĻŹÓʵ, Lubbock, Texas
  • Presented a poster on ā€œMicroRNA-455-3p as an emerging peripheral biomarker for Alzheimerā€™s diseaseā€, Subodh Kumar, Murali Vijayan, Neha Sawant, P. Hemachandra Reddy at Texas Alzheimer's Research and Care Consortium (TARCC) 2020 Symposium on January 30th, Austin, Texas, USA
  • Presented a poster on ā€œEmerging roles of microRNAs in ischemic stroke and vascular dementia: possible diagnostic and therapeutic targetsā€, Murali Vijayan, Subodh Kumar, Neha Sawant, P. Hemachandra Reddy at Texas Alzheimer's Research and Care Consortium (TARCC) 2020 Symposium on January 30th, Austin, Texas, USA
  • Poster presentation on ā€œNovel MicroRNA-455-3p and its protective effects against abnormal APP processing and amyloid beta toxicity in Alzheimer's diseaseā€. Subodh Kumar, Arubala Reddy, Xiangling Yin, P.H. Reddy. Society of Neuroscience 2019, October 19-23, 2019, Chicago, IL, USA
  • Present a talk on ā€œMicroRNA-455-3p and Alzheimerā€™s diseaseā€, Subodh Kumar, at Alzheimer's Disease Research Seminar series at Department of Internal Medicine, Texas Tech University Health Sciences Center held on May 21, 2019, Lubbock, Texas, USA
  • Oral presentation on ā€œMicroRNA-455-3p: a potential biomarker and therapeutic candidate for Alzheimerā€™s diseaseā€, Subodh Kumar, P. Hemachandra Reddy. Regional Healthy Aging and Dementia Research Symposium Organized by Garrison Institute on Aging of Texas Tech University Health Sciences Center held on 24-25th October, 2018, Lubbock, Texas, USA.
  • Presented a poster on ā€œMicroRNA-455-3p regulates amyloid precursor protein processing, mitochondrial biogenesis and synaptic events in Alzheimerā€™s diseaseā€, Kumar S, Vijayan M, Reddy AP, Yin X, Reddy PH. Regional Healthy Aging and Dementia Research Symposium Organized by Garrison Institute on Aging of Texas Tech University Health Sciences Center held on 24-25th October, 2018, Lubbock, Texas, USA. 
  • Presented a poster on ā€œExpression Level of Novel Mirna Pc-5P-12969 in Two Different in vivo Stroke Modelsā€. Vijayan M, Kumar S, Cengiz P, Karamyan VT, Reddy PH. Regional Healthy Aging and Dementia Research Symposium Organized by Garrison Institute on Aging of Texas Tech University Health Sciences Center held on 24-25th October, 2018, Lubbock, Texas, USA.
  • Poster presentation on ā€œReduced Dynamin-Related Protein 1 Mitigates Mitochondrial Fragmentation, Elevates Spatial Learning and Memory Functions and Elevates Dendritic Spines in App Transgenic Miceā€. Maria Manczak, Ramesh Kandimalla, Xiangling Yin, Murali Vijayan, Chandra Sekhar Kuruva, Subodh Kumar, P. Hemachandra Reddy. Regional Healthy Aging and Dementia Research Symposium Organized by Garrison Institute on Aging of Texas Tech University Health Sciences Center held on 24-25th October, 2018, Lubbock, Texas, USA.
  • Poster presentation on ā€œAge- and Gender-Based MicroRNA Levels in C57BL6/J miceā€. Christopher Hornback, Subodh Kumar, Murali Vijayan, C. Breann Williams, Pratibha Kottapalli, Rao Kottapalli, P. Hemachandra Reddy. Regional Healthy Aging and Dementia Research Symposium Organized by Garrison Institute on Aging of Texas Tech University Health Sciences Center held on 24-25th October, 2018, Lubbock, Texas, USA.
  • Poster presentation on ā€œProtective role of Citalopram against amyloid-beta induced mitochondrial, autophagy and synaptic toxicities in Alzheimerā€™s diseaseā€. X. Yin, AP Reddy, S. Kumar, P.H. Reddy P. Hemachandra Reddy. Regional Healthy Aging and Dementia Research Symposium Organized by Garrison Institute on Aging of Texas Tech University Health Sciences Center held on 24-25th October, 2018, Lubbock, Texas, USA.
  • Oral presentation on ā€œImprovement in risk factors implicated in Alzheimerā€™s Disease Pathogenesisā€. Hegde V, Vijayan M, Peddibhotla S, Kumar S, Dhurandhar NV, and Reddy H. American Society for Nutrition 2018, June 9-12, 2018.
  • Poster presentation on ā€œIdentification of novel circulatory microRNA signatures linked to patients with strokeā€.  M. Vijayan, S. Kumar, P.H. Reddy. Neuroscience 2017, November 11-15, 2017.
  • Poster presentation on ā€œMicroRNA-455-3p as a potential peripheral biomarker for Alzheimerā€™s diseaseā€. S. Kumar, M. Vijayan, P.H. Reddy. Neuroscience 2017, November 11-15, 2017.
  • Poster presentation on ā€œReduced dynamin-related protein 1 mitigates mitochondrial fragmentation, elevates spatial learning and memory functions and elevates dendritic spines in app transgenic miceā€. M. Manczak, R. Kandimalla, M. Vijayan, X. Yin, C. Kuruva, S. Kumar, P.H. Reddy. Neuroscience 2017, November 11-15, 2017.
  • Poster presentation on ā€œA partial loss of dynamin-related protein 1 enhances dendritic spines, reduces fragmented mitochondria and increases hippocampal based cognitive function in mutant Tau miceā€. R. Kandimalla, M. Manczak, X. Yin, C. S. Kuruva, M. Vijayan, S. Kumar, P.H. Reddy. Neuroscience 2017, November 11-15, 2017.
  • Poster presentation on ā€œMicroRNA-455-3p as a potential peripheral biomarker for Alzheimerā€™s diseaseā€. Kumar S, Vijayan M, Reddy PH. Symposium of the Center of Excellence for Translational Neuroscience and Therapeutics, April 27, 2017.
  • Poster presentation on ā€œDifferential expression of microRNAs in the skeletal muscles of mice with agingā€. Williams J, Smith F, Kumar S, Vijayan M, Reddy PH. 29th Annual Student Research Week - Molecular Neurosciences & Systems: From Nucleotides to Networks, March 7-10, 2017.
  • Poster presentation on ā€œUp regulation of microRNAs in the brains of mice with agingā€. Smith F, Williams J, Kumar S, Vijayan M, Reddy PH. 29th Annual Student Research Week - Molecular Neurosciences & Systems: From Nucleotides to Networks, March 7-10, 2017.

  1. Gowda P, Hemachandra Reddy P, Kumar S. Res Rev. 2021 Nov 20:101529. doi: 10.1016/j.arr.2021.101529.
  2. Kumar S, Morton H, Sawant N, Orlov E, Bunquin LE, Pradeepkiran JA, Alvir R, Reddy PH. . Redox Biol. 2021 Nov 9;48:102182. doi: 10.1016/j.redox.2021.102182.
  3. Morton H, Kshirsagar S, Orlov E, Bunquin LE, Sawant N, Boleng L, George M, Basu T, Ramasubramanian B, Pradeepkiran JA, Kumar S, Vijayan M, Reddy AP, Reddy PH. . Free Radic Biol Med. 2021 Aug 20;172:652-667. 
  4. Bhatti JS, Tamarai K, Kandimalla R, Manczak M, Yin X, Ramasubramanian B, Sawant N, Pradeepkiran JA, Vijayan M, Kumar S, Reddy PH (2021). . Mitochondrion. 2021 Feb 25;58:49-58. doi: 10.1016/j.mito.2021.02.007.
  5. Kumar S, Reddy PH (2021). . Biochim Biophys Acta Mol Basis Dis. 2021 Apr 1;1867(4):166052. doi: 10.1016/j.bbadis.2020.166052.
  6. Bhatti JS, Thamarai K, Kandimalla R, Manczak M, Yin X, Kumar S, Vijayan M, Reddy PH (2021). . Mol Neurobiol. 2021 Feb;58(2):795-808. doi: 10.1007/s12035-020-02142-7.
  7. Kumar S, Reddy PH (2020). . Biochim Biophys Acta Mol Basis Dis. 2020 Dec 1;1866(12):165937. doi: 10.1016/j.bbadis.2020.165937.
  8. Kumar S, Reddy AP, Yin X, Reddy PH. Biochim Biophys Acta Mol Basis Dis. 2019 Sep 1;1865(9):2428-2440. doi: 10.1016/j.bbadis.2019.06.006. Epub 2019 Jun 8. PubMed PMID: 31181293; PubMed Central PMCID: PMC6688505.
  9. Hegde V, Vijayan M, Kumar S, Akheruzzaman M, Sawant N, Dhurandhar NV, Reddy PH. Biochim Biophys Acta Mol Basis Dis. 2019 Aug 6;1865(11):165531. doi: 10.1016/j.bbadis.2019.08.007. [Epub ahead of print] PubMed PMID: 31398466.
  10. Reddy PH, Swerdlow RH, Culberson J, Kang D, Mitchell TL, Smith Q, Suneja S, Ory MG, Kumar S, Vijayan M, Morsy A, Arandia G, Lawrence JJ, George E, Oliver D, Pradeepkiran JA, Yin X, Reddy AP, Manczak M, Cengiz P, Karamyan VT, Kandimalla R, Kuruva CS, Willms J, Ramasubramanian B, Sawant N, Burugu D, Boles AN, Lopez V, Carrasco R, Aguirre C, Thompson S, Blackmon J, Ament C, Wang R, Stephens ER, Hoang B, Bass K, Trippier PC, Hornback C, Kottapalli P, Kottapalli KR, Oddo S. J Alzheimers Dis. 2019 May 17;. doi: 10.3233/JAD-190252. [Epub ahead of print] PubMed PMID: 31104030.
  11. Reddy PH, Yin X, Manczak M, Kumar S, Pradeepkiran JA, Vijayan M, Reddy AP. Hum Mol Genet. 2018 Jul 15;27(14):2502-2516. doi: 10.1093/hmg/ddy154. PubMed PMID: 29701781; PubMed Central PMCID: PMC6031001.
  12. Vijayan M, Kumar S, Yin X, Zafer D, Chanana V, Cengiz P, Reddy PH. Hum Mol Genet. 2018 Jul 1;27(13):2318-2329. doi: 10.1093/hmg/ddy136. PubMed PMID: 29701837; PubMed Central PMCID: PMC6005038.
  13. Kumar S, Reddy PH. Front Aging Neurosci. 2018;10:41. doi: 10.3389/fnagi.2018.00041. eCollection 2018. PubMed PMID: 29527164; PubMed Central PMCID: PMC5829054.
  14. Reddy PH, Manczak M, Yin X, Grady MC, Mitchell A, Tonk S, Kuruva CS, Bhatti JS, Kandimalla R, Vijayan M, Kumar S, Wang R, Pradeepkiran JA, Ogunmokun G, Thamarai K, Quesada K, Boles A, Reddy AP. J Alzheimers Dis. 2018;61(3):843-866. doi: 10.3233/JAD-170512. Review. PubMed PMID: 29332042; PubMed Central PMCID: PMC5796761.
  15. Kumar S, Vijayan M, Reddy PH. Hum Mol Genet. 2017 Oct 1;26(19):3808-3822. doi: 10.1093/hmg/ddx267. PubMed PMID: 28934394; PubMed Central PMCID: PMC6075184.
  16. Williams J, Smith F, Kumar S, Vijayan M, Reddy PH. Ageing Res Rev. 2017 May;35:350-363. doi: 10.1016/j.arr.2016.11.008. Epub 2016 Nov 27. Review. PubMed PMID: 27903442; PubMed Central PMCID: PMC5357446.
  17. Reddy PH, Tonk S, Kumar S, Vijayan M, Kandimalla R, Kuruva CS, Reddy AP. Biochem Biophys Res Commun. 2017 Feb 19;483(4):1156-1165. doi: 10.1016/j.bbrc.2016.08.067. Epub 2016 Aug 12. Review. PubMed PMID: 27524239; PubMed Central PMCID: PMC5343756.
  18. Kumar S, Vijayan M, Bhatti JS, Reddy PH. Prog Mol Biol Transl Sci. 2017;146:47-94. doi: 10.1016/bs.pmbts.2016.12.013. Epub 2017 Feb 8. Review. PubMed PMID: 28253991.
  19. Reddy PH, Williams J, Smith F, Bhatti JS, Kumar S, Vijayan M, Kandimalla R, Kuruva CS, Wang R, Manczak M, Yin X, Reddy AP. Prog Mol Biol Transl Sci. 2017;146:127-171. doi: 10.1016/bs.pmbts.2016.12.009. Epub 2017 Feb 2. Review. PubMed PMID: 28253983.
  20. Vijayan M, Kumar S, Bhatti JS, Reddy PH. Prog Mol Biol Transl Sci. 2017;146:95-126. doi: 10.1016/bs.pmbts.2016.12.014. Epub 2017 Feb 1. Review. PubMed PMID: 28253992.
  21. Kumar S, Batra A, Kanthaje S, Ghosh S, Chakraborti A. Exp Biol Med (Maywood). 2017 Feb;242(4):436-440. doi: 10.1177/1535370216681548. Epub 2016 Nov 28. PubMed PMID: 27895094; PubMed Central PMCID: PMC5298543.
  22. Bhatti JS, Kumar S, Vijayan M, Bhatti GK, Reddy PH. Prog Mol Biol Transl Sci. 2017;146:13-46. doi: 10.1016/bs.pmbts.2016.12.012. Epub 2017 Feb 1. Review. PubMed PMID: 28253984.
  23. Kumar S, Reddy PH. Biochim Biophys Acta.2016 Sep;1862(9):1617-27. doi: 10.1016/j.bbadis.2016.06.001. Epub 2016 Jun 2. Review. PubMed PMID: 27264337; PubMed Central PMCID: PMC5343750.
  24. Kumar S, Chawla YK, Ghosh S, Chakraborti A. Dis Markers. 2014;2014:435476. doi: 10.1155/2014/435476. Epub 2014 Feb 18. PubMed PMID: 24696531; PubMed Central PMCID: PMC3948614.
  25. kumar S. OVER-EXPRESSION OF MICRORNA-122 (MIR-122) INDUCES APOPTOSIS BY TARGETING CYCLING1 AND BCL-W GENES IN VITRO. Journal of Clinical and Experimental Hepatology. 2012;